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Sample GSM1009686 Query DataSets for GSM1009686
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 32
Sample type genomic
Source name whole blood 32
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467012
sentrix position: R05C02
well id: G09
age: 36
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3569896 6889
cg00000108 0.9374226 23327
cg00000109 0.8880354 12788
cg00000165 0.1290656 9585
cg00000236 0.7216644 10955
cg00000289 0.6473619 4752
cg00000292 0.8180301 25069
cg00000321 0.2519392 21429
cg00000363 0.3637927 28966
cg00000622 0.01465094 33891
cg00000658 0.8621916 18745
cg00000714 0.2254058 40560
cg00000721 0.9317995 14504
cg00000734 0.05868878 25220
cg00000769 0.02798132 24738
cg00000807 0.8347833 35762
cg00000884 0.8617744 10788
cg00000905 0.07683616 14945
cg00000924 0.4833161 35653
cg00000948 0.9060938 28716

Total number of rows: 485577

Table truncated, full table size 12854 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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