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Sample GSM1009685 Query DataSets for GSM1009685
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 31
Sample type genomic
Source name whole blood 31
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773475011
sentrix position: R05C02
well id: G06
age: 32
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3967369 4742
cg00000108 0.9403937 21542
cg00000109 0.8224508 11080
cg00000165 0.1217143 6900
cg00000236 0.6454418 10595
cg00000289 0.5762316 4183
cg00000292 0.8412184 21502
cg00000321 0.1934814 16744
cg00000363 0.3677905 24607
cg00000622 0.01545304 30703
cg00000658 0.8287894 13141
cg00000714 0.2025297 38087
cg00000721 0.9351472 14749
cg00000734 0.05878225 24125
cg00000769 0.02233218 22737
cg00000807 0.8453602 31981
cg00000884 0.8417417 9890
cg00000905 0.08573384 15973
cg00000924 0.5054278 32510
cg00000948 0.8941321 24355

Total number of rows: 485577

Table truncated, full table size 12834 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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