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Sample GSM1009684 Query DataSets for GSM1009684
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 30
Sample type genomic
Source name whole blood 30
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467012
sentrix position: R05C01
well id: A09
age: 47
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3385687 7222
cg00000108 0.9410294 26303
cg00000109 0.880107 15981
cg00000165 0.1027743 10389
cg00000236 0.6461494 17105
cg00000289 0.6570274 4603
cg00000292 0.8347529 24203
cg00000321 0.2026661 23530
cg00000363 0.3494453 33705
cg00000622 0.01208885 33981
cg00000658 0.8539531 22920
cg00000714 0.1978755 41416
cg00000721 0.9468677 17874
cg00000734 0.05877027 25304
cg00000769 0.03997567 24565
cg00000807 0.8092372 37292
cg00000884 0.8456135 13852
cg00000905 0.07515306 19500
cg00000924 0.4957653 35558
cg00000948 0.8922901 30380

Total number of rows: 485577

Table truncated, full table size 12874 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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