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Sample GSM1009683 Query DataSets for GSM1009683
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 29
Sample type genomic
Source name whole blood 29
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467015
sentrix position: R02C02
well id: H10
age: 30
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4357745 5949
cg00000108 0.9379254 17089
cg00000109 0.8608637 8769
cg00000165 0.1314191 7144
cg00000236 0.6855552 9059
cg00000289 0.5901412 3511
cg00000292 0.8294981 18152
cg00000321 0.2433787 20251
cg00000363 0.3361444 21007
cg00000622 0.0125164 26585
cg00000658 0.8576416 14223
cg00000714 0.214256 33556
cg00000721 0.9224412 10911
cg00000734 0.05498589 21160
cg00000769 0.03320033 20201
cg00000807 0.810133 27493
cg00000884 0.882014 8579
cg00000905 0.07037934 12290
cg00000924 0.451235 29091
cg00000948 0.8752894 22360

Total number of rows: 485577

Table truncated, full table size 12818 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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