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Sample GSM1009682 Query DataSets for GSM1009682
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 28
Sample type genomic
Source name whole blood 28
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773475014
sentrix position: R04C01
well id: D04
age: 35
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4004802 8230
cg00000108 0.9286162 28632
cg00000109 0.8710538 16403
cg00000165 0.1324614 10069
cg00000236 0.6910043 16897
cg00000289 0.6609756 6050
cg00000292 0.8249454 20505
cg00000321 0.2467408 20687
cg00000363 0.3566688 32297
cg00000622 0.0237031 31668
cg00000658 0.8744083 19336
cg00000714 0.2577336 43185
cg00000721 0.9211938 20774
cg00000734 0.07316209 25282
cg00000769 0.03101786 25208
cg00000807 0.8346379 35289
cg00000884 0.8774434 14122
cg00000905 0.06959106 19414
cg00000924 0.5404651 39638
cg00000948 0.8954794 30449

Total number of rows: 485577

Table truncated, full table size 12870 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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