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Sample GSM1009681 Query DataSets for GSM1009681
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 27
Sample type genomic
Source name whole blood 27
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467020
sentrix position: R06C02
well id: H03
age: 29
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4495687 5928
cg00000108 0.9550413 29505
cg00000109 0.8800073 16476
cg00000165 0.1464666 10032
cg00000236 0.6915646 16153
cg00000289 0.6466053 5217
cg00000292 0.8196138 21232
cg00000321 0.2407029 23859
cg00000363 0.3339202 34549
cg00000622 0.01753657 35996
cg00000658 0.812299 18243
cg00000714 0.2161651 45888
cg00000721 0.92954 20550
cg00000734 0.04559251 30541
cg00000769 0.03087431 24937
cg00000807 0.7848495 42024
cg00000884 0.8671047 12075
cg00000905 0.0589709 20656
cg00000924 0.474911 44003
cg00000948 0.8976442 33391

Total number of rows: 485577

Table truncated, full table size 12878 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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