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Sample GSM1009680 Query DataSets for GSM1009680
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 26
Sample type genomic
Source name whole blood 26
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467012
sentrix position: R01C02
well id: C09
age: 32
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: no
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.2103841 5081
cg00000108 0.9245555 10305
cg00000109 0.7662149 1966
cg00000165 0.1204095 6054
cg00000236 0.6718958 3661
cg00000289 0.3481717 2416
cg00000292 0.781268 15531
cg00000321 0.248107 14559
cg00000363 0.3029426 18897
cg00000622 0.0212341 28439
cg00000658 0.828593 17128
cg00000714 0.1868899 33706
cg00000721 0.839913 3117
cg00000734 0.07945521 25084
cg00000769 0.0304721 18540
cg00000807 0.8202446 28194
cg00000884 0.8761779 5949
cg00000905 0.1089317 8006
cg00000924 0.5353327 35745
cg00000948 0.8082279 25107

Total number of rows: 485577

Table truncated, full table size 12755 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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