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Sample GSM1009679 Query DataSets for GSM1009679
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 25
Sample type genomic
Source name whole blood 25
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467012
sentrix position: R04C02
well id: F09
age: 45
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4287552 6118
cg00000108 0.9352651 18916
cg00000109 0.887857 10021
cg00000165 0.1597103 7495
cg00000236 0.7440134 11217
cg00000289 0.6007951 4176
cg00000292 0.8166612 21423
cg00000321 0.2378511 19017
cg00000363 0.3529131 27156
cg00000622 0.01352754 30726
cg00000658 0.8553367 16905
cg00000714 0.2519094 37870
cg00000721 0.9260867 13727
cg00000734 0.05608373 23882
cg00000769 0.04865677 21192
cg00000807 0.8343982 32768
cg00000884 0.8561806 10886
cg00000905 0.06005803 14719
cg00000924 0.4852841 32314
cg00000948 0.8950752 25566

Total number of rows: 485577

Table truncated, full table size 12844 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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