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Sample GSM1009678 Query DataSets for GSM1009678
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 24
Sample type genomic
Source name whole blood 24
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467015
sentrix position: R06C01
well id: F10
age: 24
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3534029 9201
cg00000108 0.9553224 27162
cg00000109 0.8647233 12696
cg00000165 0.1212645 13218
cg00000236 0.7143382 13521
cg00000289 0.6412951 5799
cg00000292 0.8131931 31189
cg00000321 0.2735682 28763
cg00000363 0.3413168 41820
cg00000622 0.01489372 41864
cg00000658 0.8557581 24144
cg00000714 0.2389415 51331
cg00000721 0.9498293 17181
cg00000734 0.08245521 35677
cg00000769 0.03736902 30915
cg00000807 0.8175018 43484
cg00000884 0.8826749 12506
cg00000905 0.07545795 19116
cg00000924 0.4709614 50505
cg00000948 0.8712173 38166

Total number of rows: 485577

Table truncated, full table size 12875 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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