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Sample GSM1009677 Query DataSets for GSM1009677
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 23
Sample type genomic
Source name whole blood 23
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773475014
sentrix position: R06C02
well id: D05
age: 33
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3469248 8680
cg00000108 0.9297276 30481
cg00000109 0.8495084 17190
cg00000165 0.138217 11476
cg00000236 0.6748168 16137
cg00000289 0.5288461 5620
cg00000292 0.8190799 27636
cg00000321 0.1955862 27903
cg00000363 0.3804747 38578
cg00000622 0.01317906 41557
cg00000658 0.8160093 19651
cg00000714 0.229654 53289
cg00000721 0.9147291 20071
cg00000734 0.066967 36082
cg00000769 0.03066104 31895
cg00000807 0.8123247 48388
cg00000884 0.8661575 12863
cg00000905 0.06395824 21930
cg00000924 0.4675745 50277
cg00000948 0.893777 35542

Total number of rows: 485577

Table truncated, full table size 12873 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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