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Sample GSM1009676 Query DataSets for GSM1009676
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 22
Sample type genomic
Source name whole blood 22
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467019
sentrix position: R01C01
well id: A01
age: 29
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4419098 3670
cg00000108 0.9299155 18606
cg00000109 0.9431342 8974
cg00000165 0.1923389 6061
cg00000236 0.6994303 10257
cg00000289 0.5625537 3393
cg00000292 0.8007136 15315
cg00000321 0.2824278 14679
cg00000363 0.3980052 15641
cg00000622 0.01040912 21996
cg00000658 0.8945698 11244
cg00000714 0.2559702 32353
cg00000721 0.9211483 13102
cg00000734 0.07123466 18318
cg00000769 0.02820692 18477
cg00000807 0.8167993 27913
cg00000884 0.8123959 7709
cg00000905 0.08508645 11641
cg00000924 0.5086024 27741
cg00000948 0.8874663 21378

Total number of rows: 485577

Table truncated, full table size 12800 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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