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Sample GSM1009675 Query DataSets for GSM1009675
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 21
Sample type genomic
Source name whole blood 21
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467020
sentrix position: R01C01
well id: E02
age: 20
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4937943 4412
cg00000108 0.9385567 14450
cg00000109 0.8449622 7840
cg00000165 0.1737013 4828
cg00000236 0.663681 9278
cg00000289 0.5750359 3385
cg00000292 0.8079031 16501
cg00000321 0.2532472 15991
cg00000363 0.3472936 21700
cg00000622 0.006232957 23003
cg00000658 0.8379856 10325
cg00000714 0.2441128 30050
cg00000721 0.8900173 12011
cg00000734 0.05862286 18954
cg00000769 15403
cg00000807 0.7433488 25873
cg00000884 0.7326239 7324
cg00000905 0.06057547 11786
cg00000924 0.4778895 26358
cg00000948 0.8786058 18204

Total number of rows: 485577

Table truncated, full table size 12790 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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