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Sample GSM1009674 Query DataSets for GSM1009674
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 20
Sample type genomic
Source name whole blood 20
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467019
sentrix position: R05C02
well id: C02
age: 49
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3401313 8579
cg00000108 0.9247362 27855
cg00000109 0.8675855 16371
cg00000165 0.1652174 11170
cg00000236 0.6875221 16922
cg00000289 0.6876083 6824
cg00000292 0.7766928 26321
cg00000321 0.2616495 22476
cg00000363 0.3475347 36610
cg00000622 0.02427138 31089
cg00000658 0.8557191 17158
cg00000714 0.1747076 39572
cg00000721 0.8951362 21776
cg00000734 0.04595081 24905
cg00000769 0.03431893 21579
cg00000807 0.7582421 38240
cg00000884 0.8419827 11924
cg00000905 0.07068161 21320
cg00000924 0.4609008 41640
cg00000948 0.8946785 26039

Total number of rows: 485577

Table truncated, full table size 12872 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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