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Sample GSM1009673 Query DataSets for GSM1009673
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 19
Sample type genomic
Source name whole blood 19
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467003
sentrix position: R04C02
well id: B08
age: 65
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.2967861 6932
cg00000108 0.9378211 22480
cg00000109 0.8795895 11203
cg00000165 0.14264 8453
cg00000236 0.6159686 12412
cg00000289 0.5762009 4480
cg00000292 0.8082857 24207
cg00000321 0.2641059 21274
cg00000363 0.3525385 29406
cg00000622 0.01272637 34081
cg00000658 0.8688862 18342
cg00000714 0.1831813 40450
cg00000721 0.9397676 13929
cg00000734 0.06732888 26679
cg00000769 0.03473379 22702
cg00000807 0.8213734 34223
cg00000884 0.8457834 10074
cg00000905 0.08431499 13907
cg00000924 0.482579 36178
cg00000948 0.878953 26683

Total number of rows: 485577

Table truncated, full table size 12846 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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