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Sample GSM1009672 Query DataSets for GSM1009672
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 18
Sample type genomic
Source name whole blood 18
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467020
sentrix position: R04C01
well id: H02
age: 36
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3899965 5618
cg00000108 0.9344061 21091
cg00000109 0.8833718 10292
cg00000165 0.1387047 6987
cg00000236 0.6365875 11270
cg00000289 0.6177691 3997
cg00000292 0.8330047 19170
cg00000321 0.2735222 18542
cg00000363 0.3243856 26350
cg00000622 0.01815878 30684
cg00000658 0.8566353 14255
cg00000714 0.2400258 40229
cg00000721 0.9327037 14195
cg00000734 0.06084929 26063
cg00000769 0.03308741 22265
cg00000807 0.8283377 33396
cg00000884 0.8710958 9473
cg00000905 0.05043026 14891
cg00000924 0.4514527 35937
cg00000948 0.8823596 26328

Total number of rows: 485577

Table truncated, full table size 12844 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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