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Sample GSM1009671 Query DataSets for GSM1009671
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 17
Sample type genomic
Source name whole blood 17
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467014
sentrix position: R05C01
well id: A12
age: 34
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3888135 6533
cg00000108 0.9391073 26225
cg00000109 0.8808699 14615
cg00000165 0.136289 9644
cg00000236 0.6765745 13492
cg00000289 0.6473196 4638
cg00000292 0.8233805 23595
cg00000321 0.2629816 19004
cg00000363 0.3700608 28371
cg00000622 0.001536049 31149
cg00000658 0.8660519 19960
cg00000714 0.1946161 37271
cg00000721 0.9308813 17001
cg00000734 0.04967941 21579
cg00000769 0.04474969 23051
cg00000807 0.824887 34432
cg00000884 0.8858052 11214
cg00000905 0.05949027 15516
cg00000924 0.5031396 34936
cg00000948 0.9013533 28497

Total number of rows: 485577

Table truncated, full table size 12859 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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