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Sample GSM1009670 Query DataSets for GSM1009670
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 16
Sample type genomic
Source name whole blood 16
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467003
sentrix position: R01C02
well id: G07
age: 24
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3804615 3974
cg00000108 0.9410554 15440
cg00000109 0.8661028 7585
cg00000165 0.163608 5676
cg00000236 0.671804 7816
cg00000289 0.4761905 3365
cg00000292 0.8120115 14869
cg00000321 0.2946598 15742
cg00000363 0.3730334 20303
cg00000622 0.01638294 24865
cg00000658 0.8812215 12377
cg00000714 0.2329372 31372
cg00000721 0.9023291 11664
cg00000734 0.0628012 19820
cg00000769 0.04160441 17302
cg00000807 0.7841164 27526
cg00000884 0.819272 6988
cg00000905 0.07164885 9628
cg00000924 0.469482 26540
cg00000948 0.900228 21389

Total number of rows: 485577

Table truncated, full table size 12784 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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