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Sample GSM1009669 Query DataSets for GSM1009669
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 15
Sample type genomic
Source name whole blood 15
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467019
sentrix position: R04C01
well id: D01
age: 24
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: no
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4430419 6317
cg00000108 0.9428686 22357
cg00000109 0.8928847 10272
cg00000165 0.1275992 9422
cg00000236 0.6972067 10640
cg00000289 0.5514181 4519
cg00000292 0.8275092 21849
cg00000321 0.2455598 21915
cg00000363 0.3396981 31899
cg00000622 0.01370749 30832
cg00000658 0.8607649 16347
cg00000714 0.2410148 41997
cg00000721 0.9262738 13952
cg00000734 0.07361174 28659
cg00000769 0.03818205 23157
cg00000807 0.8044001 36899
cg00000884 0.8514466 10960
cg00000905 0.06774727 15015
cg00000924 0.4797366 38319
cg00000948 0.8732687 29719

Total number of rows: 485577

Table truncated, full table size 12850 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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