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Sample GSM1009668 Query DataSets for GSM1009668
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 14
Sample type genomic
Source name whole blood 14
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467019
sentrix position: R05C01
well id: E01
age: 21
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4235439 5583
cg00000108 0.9349886 25234
cg00000109 0.9100516 12107
cg00000165 0.1657709 9389
cg00000236 0.7120317 13273
cg00000289 0.5690035 4436
cg00000292 0.8123821 23757
cg00000321 0.251056 22863
cg00000363 0.3300872 31219
cg00000622 0.01293019 35785
cg00000658 0.8621008 16122
cg00000714 0.200474 42095
cg00000721 0.9222249 16602
cg00000734 0.04741614 29236
cg00000769 0.02943937 23338
cg00000807 0.814383 38668
cg00000884 0.8359966 10601
cg00000905 0.05827829 17917
cg00000924 0.4592329 40104
cg00000948 0.8913419 28301

Total number of rows: 485577

Table truncated, full table size 12858 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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