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Sample GSM1009667 Query DataSets for GSM1009667
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 13
Sample type genomic
Source name whole blood 13
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467015
sentrix position: R01C01
well id: A10
age: 21
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4193429 5287
cg00000108 0.915472 15315
cg00000109 0.8267954 8185
cg00000165 0.1326469 6504
cg00000236 0.6933601 8379
cg00000289 0.6113524 3353
cg00000292 0.7664807 20151
cg00000321 0.2657873 15593
cg00000363 0.3395219 22738
cg00000622 0.006932773 23700
cg00000658 0.8318141 13064
cg00000714 0.2137452 32144
cg00000721 0.9310377 10645
cg00000734 0.0612256 18340
cg00000769 0.03545658 15976
cg00000807 0.806138 24892
cg00000884 0.830841 8259
cg00000905 0.06039251 11110
cg00000924 0.4634557 26019
cg00000948 0.8800659 19344

Total number of rows: 485577

Table truncated, full table size 12808 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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