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Sample GSM1009666 Query DataSets for GSM1009666
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 12
Sample type genomic
Source name whole blood 12
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773475014
sentrix position: R01C02
well id: G04
age: 21
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.364079 3597
cg00000108 0.9245797 16792
cg00000109 0.9098477 9029
cg00000165 0.1082182 5546
cg00000236 0.6602067 9962
cg00000289 0.5946128 2870
cg00000292 0.7837205 16559
cg00000321 0.2024657 14095
cg00000363 0.3683244 20591
cg00000622 0.01125129 21142
cg00000658 0.8626279 11438
cg00000714 0.2340039 29626
cg00000721 0.939387 12884
cg00000734 0.06274648 16889
cg00000769 0.03583532 15834
cg00000807 0.8205308 25520
cg00000884 0.7934071 9213
cg00000905 0.06743316 10859
cg00000924 0.5135557 24244
cg00000948 0.8608289 19588

Total number of rows: 485577

Table truncated, full table size 12795 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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