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Sample GSM1009665 Query DataSets for GSM1009665
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 11
Sample type genomic
Source name whole blood 11
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467014
sentrix position: R04C01
well id: H11
age: 30
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3192481 6124
cg00000108 0.951529 21418
cg00000109 0.8630236 12289
cg00000165 0.131921 8208
cg00000236 0.6320806 12699
cg00000289 0.6022727 3420
cg00000292 0.8110693 20606
cg00000321 0.2590129 17042
cg00000363 0.3585348 26790
cg00000622 0.01203127 31235
cg00000658 0.8770939 19362
cg00000714 0.1821903 34589
cg00000721 0.9360868 14185
cg00000734 0.06747674 22367
cg00000769 0.04734907 22477
cg00000807 0.8474413 32163
cg00000884 0.8602835 10271
cg00000905 0.06858277 13504
cg00000924 0.4909952 31994
cg00000948 0.8894885 26585

Total number of rows: 485577

Table truncated, full table size 12850 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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