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Sample GSM1009664 Query DataSets for GSM1009664
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 10
Sample type genomic
Source name whole blood 10
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467015
sentrix position: R01C02
well id: G10
age: 32
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: no
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3808655 5931
cg00000108 0.9390081 14902
cg00000109 0.84425 8587
cg00000165 0.1199755 6418
cg00000236 0.6695482 8576
cg00000289 0.5998655 2874
cg00000292 0.7905753 16431
cg00000321 0.3270563 14185
cg00000363 0.299195 21391
cg00000622 0.00947962 24901
cg00000658 0.8216421 13614
cg00000714 0.2059875 28159
cg00000721 0.9208466 10247
cg00000734 0.04125717 19436
cg00000769 0.03406515 16662
cg00000807 0.796266 24378
cg00000884 0.7894871 7738
cg00000905 0.05810501 11689
cg00000924 0.4565527 23768
cg00000948 0.8723738 19700

Total number of rows: 485577

Table truncated, full table size 12800 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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