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Sample GSM1009663 Query DataSets for GSM1009663
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 9
Sample type genomic
Source name whole blood 9
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467019
sentrix position: R06C02
well id: D02
age: 25
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4871998 6228
cg00000108 0.9339752 28359
cg00000109 0.8522666 14548
cg00000165 0.1126181 10591
cg00000236 0.6593973 13473
cg00000289 0.567826 7117
cg00000292 0.7745726 26281
cg00000321 0.2547144 28642
cg00000363 0.3239403 41562
cg00000622 0.01355923 37439
cg00000658 0.7965884 17839
cg00000714 0.1815978 48568
cg00000721 0.9402587 19769
cg00000734 0.06010119 35673
cg00000769 0.03213694 27065
cg00000807 0.7698192 43431
cg00000884 0.7963205 11369
cg00000905 0.0589184 19741
cg00000924 0.458167 47494
cg00000948 0.8619022 33818

Total number of rows: 485577

Table truncated, full table size 12875 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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