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Sample GSM1009662 Query DataSets for GSM1009662
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 8
Sample type genomic
Source name whole blood 8
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467014
sentrix position: R06C01
well id: B12
age: 65
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3756035 9221
cg00000108 0.9390181 26990
cg00000109 0.8895726 15014
cg00000165 0.1885731 10034
cg00000236 0.6011857 14744
cg00000289 0.6286263 5622
cg00000292 0.7902801 27637
cg00000321 0.2235831 22026
cg00000363 0.3320966 29548
cg00000622 0.01327954 37326
cg00000658 0.8348368 19632
cg00000714 0.1856667 43435
cg00000721 0.9241365 19501
cg00000734 0.05727771 26385
cg00000769 0.0336707 25293
cg00000807 0.8552315 38914
cg00000884 0.8833178 11727
cg00000905 0.06903716 16746
cg00000924 0.5008628 41045
cg00000948 0.8959949 29812

Total number of rows: 485577

Table truncated, full table size 12869 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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