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Sample GSM1009661 Query DataSets for GSM1009661
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 7
Sample type genomic
Source name whole blood 7
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467020
sentrix position: R02C01
well id: F02
age: 24
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4102866 4994
cg00000108 0.9158939 18555
cg00000109 0.8809996 7463
cg00000165 0.1375998 7291
cg00000236 0.7367078 9699
cg00000289 0.6115659 3687
cg00000292 0.8111277 16705
cg00000321 0.214622 14768
cg00000363 0.3182038 22593
cg00000622 0.01932035 26090
cg00000658 0.8628232 11192
cg00000714 0.1976114 30880
cg00000721 0.9411189 12162
cg00000734 0.05109455 21096
cg00000769 0.03143341 17620
cg00000807 0.8463986 25987
cg00000884 0.8266039 7974
cg00000905 0.05954071 11875
cg00000924 0.4794989 29435
cg00000948 0.8949997 20919

Total number of rows: 485577

Table truncated, full table size 12821 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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