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Sample GSM1009660 Query DataSets for GSM1009660
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 6
Sample type genomic
Source name whole blood 6
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467014
sentrix position: R01C02
well id: C12
age: 32
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4549308 4382
cg00000108 0.9078832 18192
cg00000109 0.8627719 10153
cg00000165 0.1604464 5366
cg00000236 0.7281801 9318
cg00000289 0.6666667 2672
cg00000292 0.8194009 13621
cg00000321 0.3331136 13553
cg00000363 0.3680121 17788
cg00000622 0.02152254 20576
cg00000658 0.8424076 14520
cg00000714 0.2401231 27515
cg00000721 0.9005102 11268
cg00000734 0.07337058 16010
cg00000769 0.03862382 15305
cg00000807 0.822651 24676
cg00000884 0.8213568 7860
cg00000905 0.06966221 9403
cg00000924 0.5529672 22952
cg00000948 0.8751767 19712

Total number of rows: 485577

Table truncated, full table size 12779 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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