|
| Status |
Public on Jan 01, 2013 |
| Title |
OSCC mRNA 562 |
| Sample type |
RNA |
| |
|
| Source name |
OSCC
|
| Organism |
Homo sapiens |
| Characteristics |
gender: F
source tissue: Tongue
tissue: Oral cavity squamous cell carcinoma tumor
case: 562
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Tri-reagent (Sigma)
|
| Label |
biotin
|
| Label protocol |
Standard Affymetrix protocol
|
| |
|
| Hybridization protocol |
Standard Affymetrix protocol
|
| Scan protocol |
Standard Affymetrix protocol
|
| Description |
Tongue
|
| Data processing |
Used aroma.affymetrix package in R for data processing. We performed background correction using RMA and quantile normalization. Then we estimated the overall expression for the transcript using ExonRmaPlm function.
probe group file not applicable
HuEx-1_0-st-v2.na32.hg19.probeset.csv
|
| |
|
| Submission date |
Sep 24, 2012 |
| Last update date |
Jan 01, 2013 |
| Contact name |
Jiexin Zhang |
| E-mail(s) |
jiexinzhang@mdanderson.org
|
| Organization name |
UT MD Anderson Cancer Center
|
| Department |
Bioinformatics & Computational Biology
|
| Street address |
1515 Holcombe Blvd
|
| City |
Houston |
| State/province |
TX |
| ZIP/Postal code |
77030 |
| Country |
USA |
| |
|
| Platform ID |
GPL5175 |
| Series (2) |
| GSE41116 |
Integrative genomic characterization of oral squamous cell carcinoma identifies frequent somatic drivers (mRNA) |
| GSE41117 |
Integrative genomic characterization of oral squamous cell carcinoma identifies frequent somatic drivers |
|
