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Sample GSM1008852 Query DataSets for GSM1008852
Status Public on Jan 01, 2013
Title OSCC mRNA 234
Sample type RNA
 
Source name OSCC
Organism Homo sapiens
Characteristics gender: F
source tissue: Tongue
tissue: Oral cavity squamous cell carcinoma tumor
case: 234
Extracted molecule total RNA
Extraction protocol Tri-reagent (Sigma)
Label biotin
Label protocol Standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Description Tongue
Data processing Used aroma.affymetrix package in R for data processing. We performed background correction using RMA and quantile normalization. Then we estimated the overall expression for the transcript using ExonRmaPlm function.
probe group file not applicable
HuEx-1_0-st-v2.na32.hg19.probeset.csv
 
Submission date Sep 24, 2012
Last update date Jan 01, 2013
Contact name Jianjun Zhang
E-mail(s) JZhang20@mdanderson.org
Organization name UT MD Anderson Cancer Center
Department Thoracic-Head & Neck Med Onc
Street address 1515 Holcombe Blvd
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL5175
Series (2)
GSE41116 Integrative genomic characterization of oral squamous cell carcinoma identifies frequent somatic drivers (mRNA)
GSE41117 Integrative genomic characterization of oral squamous cell carcinoma identifies frequent somatic drivers

Data table header descriptions
ID_REF
VALUE background corrected, quantile normalized and log2 transformed data

Data table
ID_REF VALUE
2315251 5.969946276
2315373 6.539452062
2315554 7.445744622
2315633 7.624748054
2315674 7.157329509
2315739 7.681387486
2315894 8.137586886
2315918 5.992263636
2315951 8.118968313
2316069 7.853434065
2316218 6.152540938
2316245 8.363004862
2316379 9.768757175
2316558 9.052899173
2316605 7.470676373
2316746 7.760995607
2316905 6.28017139
2316953 6.812010589
2317246 6.945921898
2317317 7.408856938

Total number of rows: 18708

Table truncated, full table size 363 Kbytes.




Supplementary file Size Download File type/resource
GSM1008852_1067_CP_029_03-01-11_HuEx-1_0-st-v2_.CEL.gz 24.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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