NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1008747 Query DataSets for GSM1008747
Status Public on Jan 01, 2013
Title OSCC methylation 478
Sample type genomic
 
Source name OSCC
Organism Homo sapiens
Characteristics gender: F
source tissue: Tongue
tissue: Oral cavity squamous cell carcinoma tumor
case: 478
Treatment protocol not applicable
Growth protocol not applicable
Extracted molecule genomic DNA
Extraction protocol Tri-reagent (Sigma)
Label Cy5 and Cy3
Label protocol Standard Illumina protocol
 
Hybridization protocol Standard Illumina protocol
Scan protocol Standard Illumina protocol
Description Tongue
Data processing GenomeStudio software V2010.3 with GenomeStudio Methylation Version 1.8.5.
 
Submission date Sep 24, 2012
Last update date Jan 01, 2013
Contact name Jianjun Zhang
E-mail(s) JZhang20@mdanderson.org
Organization name UT MD Anderson Cancer Center
Department Thoracic-Head & Neck Med Onc
Street address 1515 Holcombe Blvd
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL13534
Series (2)
GSE41114 Integrative genomic characterization of oral squamous cell carcinoma identifies frequent somatic drivers (methylation)
GSE41117 Integrative genomic characterization of oral squamous cell carcinoma identifies frequent somatic drivers

Data table header descriptions
ID_REF
VALUE Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.31391 0
cg00000108 0.92767 0
cg00000109 0.84133 0
cg00000165 0.38235 0
cg00000236 0.81824 0
cg00000289 0.5528 0
cg00000292 0.49573 0
cg00000321 0.45089 0
cg00000363 0.2799 0
cg00000622 0.01671 0
cg00000658 0.75383 0
cg00000714 0.15372 0
cg00000721 0.88998 0
cg00000734 0.08034 0
cg00000769 0.04215 0
cg00000807 0.76749 0
cg00000884 0.81076 0
cg00000905 0.09983 0
cg00000924 0.39143 0
cg00000948 0.86155 0

Total number of rows: 485577

Table truncated, full table size 9918 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap