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Sample GSM1005573 Query DataSets for GSM1005573
Status Public on Oct 09, 2013
Title Third trimester Placenta 3T.3
Sample type SRA
Source name Third trimester Placenta
Organism Homo sapiens
Characteristics tissue: Fetal placenta tissue
developmental stage: third trimester
Extracted molecule genomic DNA
Extraction protocol Modified Illumina RRBS Sample Preparation Protocol
Library strategy Bisulfite-Seq
Library source genomic
Library selection Reduced Representation
Instrument model Illumina Genome Analyzer IIx
Data processing paired-end 36-base pair (bp) reads were filtered based on qseq score
reads were aligned to CpG Islands in the bisulfite-converted human genome (UCSC Build hg19, GRCh37, Feb 2009) using Bowtie
Partially methylated regions (30-70% methylation) were selected
Concordance was calculated based on whether the neighbouring CpG site showed the same methylation pattern
Genome_build: hg19
Supplementary_files_format_and_content: Series supplementary files contain Allele-specific partially methylated regions in human placental tissue with concordance >85%; numbers represent the concordance value)
Submission date Sep 18, 2012
Last update date May 15, 2019
Contact name Chunming Ding
Organization name Wenzhou Medical University
Street address School of Laboratory Medicine and Life Sciences
City Wenzhou
State/province Zhejiang
ZIP/Postal code 325035
Country China
Platform ID GPL10999
Series (1)
GSE40955 Allele-specific Methylation of Human Placental Tissue
SRA SRX187583
BioSample SAMN01178480

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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