|
Status |
Public on Oct 09, 2013 |
Title |
Third trimester Placenta 3T.1 |
Sample type |
SRA |
|
|
Source name |
Third trimester Placenta
|
Organism |
Homo sapiens |
Characteristics |
tissue: Fetal placenta tissue developmental stage: third trimester
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Modified Illumina RRBS Sample Preparation Protocol
|
|
|
Library strategy |
Bisulfite-Seq |
Library source |
genomic |
Library selection |
Reduced Representation |
Instrument model |
Illumina Genome Analyzer IIx |
|
|
Data processing |
paired-end 36-base pair (bp) reads were filtered based on qseq score reads were aligned to CpG Islands in the bisulfite-converted human genome (UCSC Build hg19, GRCh37, Feb 2009) using Bowtie Partially methylated regions (30-70% methylation) were selected Concordance was calculated based on whether the neighbouring CpG site showed the same methylation pattern Genome_build: hg19 Supplementary_files_format_and_content: Series supplementary files contain Allele-specific partially methylated regions in human placental tissue with concordance >85%; numbers represent the concordance value)
|
|
|
Submission date |
Sep 18, 2012 |
Last update date |
May 15, 2019 |
Contact name |
Chunming Ding |
E-mail(s) |
cmding@gmail.com
|
Organization name |
Wenzhou Medical University
|
Street address |
School of Laboratory Medicine and Life Sciences
|
City |
Wenzhou |
State/province |
Zhejiang |
ZIP/Postal code |
325035 |
Country |
China |
|
|
Platform ID |
GPL10999 |
Series (1) |
GSE40955 |
Allele-specific Methylation of Human Placental Tissue |
|
Relations |
SRA |
SRX187581 |
BioSample |
SAMN01178478 |