|
| Status |
Public on Oct 09, 2013 |
| Title |
First trimester CVS 1T.3 |
| Sample type |
SRA |
| |
|
| Source name |
First trimester CVS
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: CVS tissue
developmental stage: first trimester
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Modified Illumina RRBS Sample Preparation Protocol
|
| |
|
| Library strategy |
Bisulfite-Seq |
| Library source |
genomic |
| Library selection |
Reduced Representation |
| Instrument model |
Illumina Genome Analyzer IIx |
| |
|
| Data processing |
paired-end 36-base pair (bp) reads were filtered based on qseq score
reads were aligned to CpG Islands in the bisulfite-converted human genome (UCSC Build hg19, GRCh37, Feb 2009) using Bowtie
Partially methylated regions (30-70% methylation) were selected
Concordance was calculated based on whether the neighbouring CpG site showed the same methylation pattern
Genome_build: hg19
Supplementary_files_format_and_content: Series supplementary files contain Allele-specific partially methylated regions in human placental tissue with concordance >85%; numbers represent the concordance value)
|
| |
|
| Submission date |
Sep 18, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Chunming Ding |
| E-mail(s) |
cmding@gmail.com
|
| Organization name |
Wenzhou Medical University
|
| Street address |
School of Laboratory Medicine and Life Sciences
|
| City |
Wenzhou |
| State/province |
Zhejiang |
| ZIP/Postal code |
325035 |
| Country |
China |
| |
|
| Platform ID |
GPL10999 |
| Series (1) |
| GSE40955 |
Allele-specific Methylation of Human Placental Tissue |
|
| Relations |
| SRA |
SRX187578 |
| BioSample |
SAMN01178475 |
