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Sample GSM1004631 Query DataSets for GSM1004631
Status Public on Sep 18, 2012
Title trans.diff_4F_HFF637.1_p5_Smooth.Muscle_630.1767.1.2
Sample type genomic
 
Source name transdifferentiated fibroblast to Smooth Muscle with Yamanaka Transcription Factors (OSKM)
Organism Homo sapiens
Characteristics gender: MALE
passage number: 5
loring pipeline sample id: 630.1767.1.2
cell line: HFF637
tissue: transdifferentiated fibroblast to Smooth Muscle with Yamanaka Transcription Factors (OSKM)
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from LBC samples using Qiagen DNeasy Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium HD Human Methylation450k Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using IScan using standard recommended Illumina scanner setting
Description SAMPLE 7
Data processing Genome Studio software v2010.3
 
Submission date Sep 14, 2012
Last update date Sep 18, 2012
Contact name Rathi D Thiagarajan
E-mail(s) rthiagarajan@ucsd.edu
Organization name UCSD
Department Reproductive Medicine
Lab Louise Laurent
Street address 2880 Torrey Pines Scenic Drive
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL13534
Series (2)
GSE40909 Conversion of human fibroblasts into vascular cells (methylation)
GSE40927 Conversion of human fibroblasts into vascular cells

Data table header descriptions
ID_REF
VALUE Average Beta and normalized beta (Normalization method: Average beta values are range scaled.)
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.7066239 0
cg00000108 0.8520736 0
cg00000109 0.7885131 0
cg00000165 0.2341269 0
cg00000236 0.7806512 0
cg00000289 0.6189625 0
cg00000292 0.7609754 0
cg00000321 0.4069442 0
cg00000363 0.533614 0
cg00000622 0.03678221 0
cg00000658 0.7550483 0
cg00000714 0.1791931 0
cg00000721 0.7612827 0
cg00000734 0.1130223 0
cg00000769 0.1191171 0
cg00000807 0.69244 0
cg00000884 0.678212 0
cg00000905 0.1683838 0
cg00000924 0.4536501 0
cg00000948 0.8144501 0

Total number of rows: 485577

Table truncated, full table size 10933 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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