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Sample GSM1003882 Query DataSets for GSM1003882
Status Public on Dec 18, 2012
Title UPN 989176, 3 day Mock treatment, array plate number 7
Sample type genomic
Source name Bone marrow biopsy, mock
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M1
molecular classification: normal karyotype
gender: female
age: 76 years
tissue: bone marrow
treatment: mock
aml sample identifier: 989176
array plate number: 7
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 989176_Mock_7
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.60833576
cg00000108 0.961359774
cg00000109 0.939336231
cg00000165 0.218775164
cg00000236 0.918708944
cg00000289 0.841894246
cg00000292 0.86031828
cg00000321 0.581201224
cg00000363 0.26678336
cg00000622 0.026011839
cg00000658 0.82933012
cg00000714 0.436832145
cg00000721 0.934495832
cg00000734 0.096759083
cg00000769 0.055267134
cg00000807 0.914746414
cg00000884 0.86090895
cg00000905 0.093305854
cg00000924 0.57086559
cg00000948 0.872289634

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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