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Sample GSM1003881 Query DataSets for GSM1003881
Status Public on Dec 18, 2012
Title UPN 989176, 3 day Mock treatment, array plate number 3
Sample type genomic
Source name Bone marrow biopsy, mock
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M1
molecular classification: normal karyotype
gender: female
age: 76 years
tissue: bone marrow
treatment: mock
aml sample identifier: 989176
array plate number: 3
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 989176_Mock_3
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.589282329
cg00000108 0.93047152
cg00000109 0.892504298
cg00000165 0.189484088
cg00000236 0.876909897
cg00000289 0.724519226
cg00000292 0.858831682
cg00000321 0.528863036
cg00000363 0.234835223
cg00000622 0.025097507
cg00000658 0.843055348
cg00000714 0.428084952
cg00000721 0.922370586
cg00000734 0.12736863
cg00000769 0.078665257
cg00000807 0.885715033
cg00000884 0.864792385
cg00000905 0.10638641
cg00000924 0.472618763
cg00000948 0.879252884

Total number of rows: 485577

Table truncated, full table size 10864 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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