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Sample GSM1003880 Query DataSets for GSM1003880
Status Public on Dec 18, 2012
Title UPN 989176, 3 day DAC treatment, array plate number 7
Sample type genomic
Source name Bone marrow biopsy, DAC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M1
molecular classification: normal karyotype
gender: female
age: 76 years
tissue: bone marrow
treatment: decitabine (DAC)
aml sample identifier: 989176
array plate number: 7
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 989176_DAC_7
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.611082527
cg00000108 0.923622805
cg00000109 0.904014655
cg00000165 0.220327855
cg00000236 0.874383783
cg00000289 0.746247014
cg00000292 0.833870733
cg00000321 0.557950339
cg00000363 0.234672681
cg00000622 0.04105499
cg00000658 0.78039895
cg00000714 0.401517294
cg00000721 0.910426564
cg00000734 0.123020024
cg00000769 0.070604051
cg00000807 0.863671508
cg00000884 0.880982228
cg00000905 0.144207677
cg00000924 0.558228939
cg00000948 0.831151346

Total number of rows: 485577

Table truncated, full table size 10864 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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