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Sample GSM1003879 Query DataSets for GSM1003879
Status Public on Dec 18, 2012
Title UPN 989176, 3 day DAC treatment, array plate number 3
Sample type genomic
Source name Bone marrow biopsy, DAC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M1
molecular classification: normal karyotype
gender: female
age: 76 years
tissue: bone marrow
treatment: decitabine (DAC)
aml sample identifier: 989176
array plate number: 3
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 989176_DAC_3
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.57398951
cg00000108 0.891809583
cg00000109 0.863873684
cg00000165 0.194767481
cg00000236 0.866288482
cg00000289 0.757172282
cg00000292 0.808007287
cg00000321 0.506666573
cg00000363 0.248861619
cg00000622 0.020822468
cg00000658 0.795345758
cg00000714 0.421354868
cg00000721 0.876567354
cg00000734 0.117317819
cg00000769 0.074544958
cg00000807 0.843062014
cg00000884 0.857758543
cg00000905 0.114295571
cg00000924 0.45446788
cg00000948 0.825390281

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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