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Sample GSM1003878 Query DataSets for GSM1003878
Status Public on Dec 18, 2012
Title UPN 989176, 3 day AraC treatment, array plate number 7
Sample type genomic
Source name Bone marrow biopsy, AraC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M1
molecular classification: normal karyotype
gender: female
age: 76 years
tissue: bone marrow
treatment: cytarabine (AraC)
aml sample identifier: 989176
array plate number: 7
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 989176_AraC_7
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.644261217
cg00000108 0.937495519
cg00000109 0.942771152
cg00000165 0.180184128
cg00000236 0.881678023
cg00000289 0.856281295
cg00000292 0.840971171
cg00000321 0.532213902
cg00000363 0.224510517
cg00000622 0.021784794
cg00000658 0.835428976
cg00000714 0.429878475
cg00000721 0.925595754
cg00000734 0.103333452
cg00000769 0.060170908
cg00000807 0.901551391
cg00000884 0.868422245
cg00000905 0.102781477
cg00000924 0.582368436
cg00000948 0.882141708

Total number of rows: 485577

Table truncated, full table size 10864 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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