GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1003877 Query DataSets for GSM1003877
Status Public on Dec 18, 2012
Title UPN 989176, 3 day AraC treatment, array plate number 3
Sample type genomic
Source name Bone marrow biopsy, AraC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M1
molecular classification: normal karyotype
gender: female
age: 76 years
tissue: bone marrow
treatment: cytarabine (AraC)
aml sample identifier: 989176
array plate number: 3
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 989176_AraC_3
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.663060161
cg00000108 0.916480515
cg00000109 0.914162612
cg00000165 0.189445402
cg00000236 0.869323829
cg00000289 0.741303035
cg00000292 0.837739982
cg00000321 0.560108565
cg00000363 0.256850407
cg00000622 0.024111805
cg00000658 0.832676212
cg00000714 0.433049037
cg00000721 0.93080571
cg00000734 0.116854099
cg00000769 0.088648982
cg00000807 0.913289423
cg00000884 0.879392035
cg00000905 0.109087149
cg00000924 0.488274801
cg00000948 0.886192603

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap