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Sample GSM1003876 Query DataSets for GSM1003876
Status Public on Dec 18, 2012
Title UPN 869922, 3 day Mock treatment, array plate number 9
Sample type genomic
Source name Bone marrow biopsy, mock
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M2
molecular classification: normal karyotype
gender: female
age: 56 years
tissue: bone marrow
treatment: mock
aml sample identifier: 869922
array plate number: 9
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 869922_Mock_9
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.690124982
cg00000108 0.938730667
cg00000109 0.925381458
cg00000165 0.495404916
cg00000236 0.881856427
cg00000289 0.775159489
cg00000292 0.757684717
cg00000321 0.671494881
cg00000363 0.319759653
cg00000622 0.022445158
cg00000658 0.795165701
cg00000714 0.457412565
cg00000721 0.921177855
cg00000734 0.125514791
cg00000769 0.060603342
cg00000807 0.877127175
cg00000884 0.84960809
cg00000905 0.095783044
cg00000924 0.595353921
cg00000948 0.890384267

Total number of rows: 485577

Table truncated, full table size 10864 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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