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Sample GSM1003875 Query DataSets for GSM1003875
Status Public on Dec 18, 2012
Title UPN 869922, 3 day Mock treatment, array plate number 10
Sample type genomic
Source name Bone marrow biopsy, mock
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M2
molecular classification: normal karyotype
gender: female
age: 56 years
tissue: bone marrow
treatment: mock
aml sample identifier: 869922
array plate number: 10
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 869922_Mock_10
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.68385336
cg00000108 0.940544987
cg00000109 0.894691555
cg00000165 0.506591431
cg00000236 0.891652682
cg00000289 0.769186336
cg00000292 0.758617551
cg00000321 0.686610263
cg00000363 0.325418139
cg00000622 0.021934094
cg00000658 0.814047631
cg00000714 0.468451271
cg00000721 0.94091009
cg00000734 0.111235424
cg00000769 0.075733362
cg00000807 0.87402284
cg00000884 0.877958864
cg00000905 0.103116929
cg00000924 0.597116171
cg00000948 0.888102432

Total number of rows: 485577

Table truncated, full table size 10864 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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