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Sample GSM1003874 Query DataSets for GSM1003874
Status Public on Dec 18, 2012
Title UPN 869922, 3 day DAC treatment, array plate number 9
Sample type genomic
Source name Bone marrow biopsy, DAC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M2
molecular classification: normal karyotype
gender: female
age: 56 years
tissue: bone marrow
treatment: decitabine (DAC)
aml sample identifier: 869922
array plate number: 9
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 869922_DAC_9
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.591600578
cg00000108 0.896151107
cg00000109 0.795985047
cg00000165 0.492914349
cg00000236 0.834582685
cg00000289 0.720134309
cg00000292 0.705720956
cg00000321 0.62227016
cg00000363 0.268988108
cg00000622 0.026798223
cg00000658 0.768995682
cg00000714 0.431068459
cg00000721 0.871960451
cg00000734 0.108836908
cg00000769 0.059528322
cg00000807 0.793233344
cg00000884 0.852577454
cg00000905 0.150620431
cg00000924 0.569125987
cg00000948 0.853002352

Total number of rows: 485577

Table truncated, full table size 10864 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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