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Sample GSM1003873 Query DataSets for GSM1003873
Status Public on Dec 18, 2012
Title UPN 869922, 3 day DAC treatment, array plate number 10
Sample type genomic
Source name Bone marrow biopsy, DAC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M2
molecular classification: normal karyotype
gender: female
age: 56 years
tissue: bone marrow
treatment: decitabine (DAC)
aml sample identifier: 869922
array plate number: 10
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 869922_DAC_10
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.558368126
cg00000108 0.890683106
cg00000109 0.825836978
cg00000165 0.488422851
cg00000236 0.820680921
cg00000289 0.691059802
cg00000292 0.707742998
cg00000321 0.624357624
cg00000363 0.334981043
cg00000622 0.028544221
cg00000658 0.777371959
cg00000714 0.440846283
cg00000721 0.856920825
cg00000734 0.091941473
cg00000769 0.072529431
cg00000807 0.812328073
cg00000884 0.858079651
cg00000905 0.146829873
cg00000924 0.619600802
cg00000948 0.84320388

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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