GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1003872 Query DataSets for GSM1003872
Status Public on Dec 18, 2012
Title UPN 869922, 3 day AraC treatment, array plate number 9
Sample type genomic
Source name Bone marrow biopsy, AraC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M2
molecular classification: normal karyotype
gender: female
age: 56 years
tissue: bone marrow
treatment: cytarabine (AraC)
aml sample identifier: 869922
array plate number: 9
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 869922_AraC_9
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.64614202
cg00000108 0.935241874
cg00000109 0.919890743
cg00000165 0.500746891
cg00000236 0.86425556
cg00000289 0.810664969
cg00000292 0.733134777
cg00000321 0.658686785
cg00000363 0.284229154
cg00000622 0.02257609
cg00000658 0.813796473
cg00000714 0.457176139
cg00000721 0.933882857
cg00000734 0.124409489
cg00000769 0.069378516
cg00000807 0.896828708
cg00000884 0.866600506
cg00000905 0.134314332
cg00000924 0.598067037
cg00000948 0.895172241

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap