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Sample GSM1003869 Query DataSets for GSM1003869
Status Public on Dec 18, 2012
Title UPN 831711, 3 day Mock treatment, array plate number 10
Sample type genomic
Source name Bone marrow biopsy, mock
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M1
molecular classification: normal karyotype
gender: female
age: 57 years
tissue: bone marrow
treatment: mock
aml sample identifier: 831711
array plate number: 10
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 831711_Mock_10
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.88301011
cg00000108 0.93768535
cg00000109 0.928128101
cg00000165 0.198450435
cg00000236 0.846621047
cg00000289 0.788175897
cg00000292 0.899463527
cg00000321 0.529653955
cg00000363 0.343624147
cg00000622 0.01655659
cg00000658 0.812463241
cg00000714 0.428114824
cg00000721 0.929553618
cg00000734 0.104728197
cg00000769 0.064690574
cg00000807 0.915626915
cg00000884 0.921954484
cg00000905 0.124060281
cg00000924 0.591828024
cg00000948 0.907717538

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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