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Sample GSM1003868 Query DataSets for GSM1003868
Status Public on Dec 18, 2012
Title UPN 831711, 3 day DAC treatment, array plate number 9
Sample type genomic
Source name Bone marrow biopsy, DAC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M1
molecular classification: normal karyotype
gender: female
age: 57 years
tissue: bone marrow
treatment: decitabine (DAC)
aml sample identifier: 831711
array plate number: 9
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 831711_DAC_9
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.838067593
cg00000108 0.905152881
cg00000109 0.861157043
cg00000165 0.187842326
cg00000236 0.809089792
cg00000289 0.694255829
cg00000292 0.851385902
cg00000321 0.509137345
cg00000363 0.301327739
cg00000622 0.022242454
cg00000658 0.756194788
cg00000714 0.400237812
cg00000721 0.845628264
cg00000734 0.121681724
cg00000769 0.049255434
cg00000807 0.816250488
cg00000884 0.831170867
cg00000905 0.129365383
cg00000924 0.597867671
cg00000948 0.835055303

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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