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Sample GSM1003867 Query DataSets for GSM1003867
Status Public on Dec 18, 2012
Title UPN 831711, 3 day DAC treatment, array plate number 10
Sample type genomic
Source name Bone marrow biopsy, DAC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M1
molecular classification: normal karyotype
gender: female
age: 57 years
tissue: bone marrow
treatment: decitabine (DAC)
aml sample identifier: 831711
array plate number: 10
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 831711_DAC_10
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.777240726
cg00000108 0.930356726
cg00000109 0.864002547
cg00000165 0.226639714
cg00000236 0.814222708
cg00000289 0.731809762
cg00000292 0.866099245
cg00000321 0.538423794
cg00000363 0.275045986
cg00000622 0.024129554
cg00000658 0.737839826
cg00000714 0.404114944
cg00000721 0.863308756
cg00000734 0.094348541
cg00000769 0.063923776
cg00000807 0.820296361
cg00000884 0.858130855
cg00000905 0.134214944
cg00000924 0.596622262
cg00000948 0.836355891

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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