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Sample GSM1003865 Query DataSets for GSM1003865
Status Public on Dec 18, 2012
Title UPN 831711, 3 day AraC treatment, array plate number 10
Sample type genomic
Source name Bone marrow biopsy, AraC
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M1
molecular classification: normal karyotype
gender: female
age: 57 years
tissue: bone marrow
treatment: cytarabine (AraC)
aml sample identifier: 831711
array plate number: 10
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 831711_AraC_10
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.910083238
cg00000108 0.942578517
cg00000109 0.907082464
cg00000165 0.207611514
cg00000236 0.843938493
cg00000289 0.738716109
cg00000292 0.909726677
cg00000321 0.566076887
cg00000363 0.328858559
cg00000622 0.025044271
cg00000658 0.810342041
cg00000714 0.428529048
cg00000721 0.933229537
cg00000734 0.12388103
cg00000769 0.067485639
cg00000807 0.899878125
cg00000884 0.884232316
cg00000905 0.129946747
cg00000924 0.637540732
cg00000948 0.898284575

Total number of rows: 485577

Table truncated, full table size 10865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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