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Sample GSM1003864 Query DataSets for GSM1003864
Status Public on Dec 18, 2012
Title UPN 775109, 3 day Mock treatment, array plate number 9
Sample type genomic
Source name Bone marrow biopsy, mock
Organism Homo sapiens
Characteristics disease status: acute myeloid leukemia (AML)
fab: M5
molecular classification: MLL translocation, poor risk
gender: male
age: 45 years
tissue: bone marrow
treatment: mock
aml sample identifier: 775109
array plate number: 9
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using the Qiagen QIAamp DNA Mini Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using the standard recommended Illumina scanner setting.
Description 775109_Mock_9
Data processing BeadStudio software v3.2.
Submission date Sep 13, 2012
Last update date Dec 18, 2012
Contact name Nobish Varghese
Organization name Washington University in St.Louis
Street address 4444 Forest Park Ave.
City StLouis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL13534
Series (2)
GSE40870 Transient low-dose decitabine treatment of primary AML samples
GSE40871 Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine

Data table header descriptions
VALUE Methylation Beta value

Data table
cg00000029 0.64202728
cg00000108 0.952843153
cg00000109 0.936383089
cg00000165 0.197154094
cg00000236 0.899523055
cg00000289 0.746507617
cg00000292 0.90545272
cg00000321 0.233991197
cg00000363 0.364049418
cg00000622 0.03047457
cg00000658 0.851760267
cg00000714 0.26384616
cg00000721 0.924159036
cg00000734 0.100753389
cg00000769 0.067622761
cg00000807 0.903871173
cg00000884 0.88341482
cg00000905 0.107552719
cg00000924 0.5667612
cg00000948 0.898349366

Total number of rows: 485577

Table truncated, full table size 10864 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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